WINTER SCHOOL ALGORITHMS
IN STRUCTURAL BIOINFORMATICS :

MODELING LARGE MACROMOLECULAR ASSEMBLIES

8-12 december 2014, Inria Sophia Antipolis, France

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Instructions for Practicals

Each participant is expected to bring his/her laptop, running under Linux or MacOSX.

For each class, the practical will consist of running binary programs and/or scripting in python and/or using web servers.

General pre-requisites

• VMD, Pymol, Rasmol, Chimera.

Connecting to the wifi and to the internet

Each participant will be provided the information directly.

Pre-requisites and information for the practical by G. Hummer

• Install Anaconda, and a compatible python distribution if needed.
• Binaries for Mac
• Binaries for Ubuntu

Pre-requisites and information for the practical by D. Svergun

• Install ATSAS. The distribution encloses binaries for all major platforms. NB: one must register agree to the academic license since ATSAS is not free for industrial users.
• Material for the practical

Pre-requisites and information for the practical by H. Wolfson

• The practical will be run using the following Lab's servers . Visualization will be done using chimera.
• Material for the practical

Pre-requisites and information for the practical by R. Pellarin

Pre-requisites and information for the practical by F. Cazals

• Install graphviz (Ubuntu: sudo apt-get install graphviz) ( Fedora: sudo yum install graphviz)
• Static binaries will be made available for linux distributions (tested on Ubuntu > 12.04; Fedora > 19).
• Material: pdf document, executables, data